genedb options

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@1896 ee4ac58c-ac51-4696-9907-e4b3aa274f04

etc/options

@@ -2,7 +2,7 @@
 
 # (Note that comment lines start with a hash (#) symbol)
 
-# $Header: //tmp/pathsoft/artemis/etc/options,v 1.10 2004-08-09 14:32:39 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/etc/options,v 1.11 2004-09-30 12:42:21 tjc Exp $
 
 # This file should contain option settings that look like this:
 #
@@ -142,6 +142,15 @@ colour_15 = 255  63  63
 colour_16 = 255 127 127
 colour_17 = 255 191 191
 
+# GeneDB colours
+#
+colour_101 = 102 51 153
+colour_102 = 153 102 204
+colour_103 = 255 248 220
+
+#
+#
+
 colour_of_CDS = 5
 colour_of_cds? = 7
 colour_of_BLASTCDS = 2
@@ -479,6 +488,9 @@ invisible_qualifiers = \
 # These pairs consist of a program name and a parameter string.
 # For blast and fasta the parameter string is the name of the database to
 # search.
+#
+# /nfs/pathsoft/databases/GO/new
+# /nfs/pathsoft/databases/protein/go_all
 feature_protein_programs = \
     fasta %uniprot \
     fasta %uniprot_archaea \
@@ -498,7 +510,8 @@ feature_protein_programs = \
     blastp %uniprot_rest \
     blastp psu/Kineto_aa \
     tblastn %embl_other \
-    blastp+go /nfs/pathsoft/databases/protein/go_all \
+    blastp+go psu/go_all \
+    blastp+go /nfs/pathsoft/databases/GO/new/go_all \
     hth - \
     smart - \
     clustalx PROTEIN \
@@ -514,6 +527,8 @@ feature_dna_programs = \
 application_programs = \
     jalview
 
+mess_fasta_hits = 10
+
 # this is the list of keys that should be displayed by default in the edit
 # window
 common_keys = \