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Commit a61c6c63 authored by tcarver's avatar tcarver
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define BAM_SUFFIX pattern

parent 636cf9d3
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......@@ -210,6 +210,7 @@ public class BamView extends JPanel
private CoveragePanel coverageView = new CoveragePanel();
protected static String BAM_SUFFIX = ".*\\.(bam|cram)$";
/** Used to colour the frames. */
private static Color LIGHT_GREY = new Color(200, 200, 200);
private static Color DARK_GREEN = new Color(0, 150, 0);
......@@ -2240,10 +2241,10 @@ public class BamView extends JPanel
{
FileSelectionDialog bamFileSelection = new FileSelectionDialog(
null, false, "BamView", "BAM");
List<String> bamFiles = bamFileSelection.getFiles(".*\\.(bam|cram)$");
List<String> bamFiles = bamFileSelection.getFiles(BAM_SUFFIX);
int count = bamList.size();
bamList.addAll(bamFileSelection.getFiles(".*\\.(bam|cram)$"));
bamList.addAll(bamFileSelection.getFiles(BAM_SUFFIX));
for(int i=0; i<bamFiles.size(); i++)
addToViewMenu(i+count);
......@@ -3670,7 +3671,7 @@ public class BamView extends JPanel
System.setProperty("default_directory", System.getProperty("user.dir"));
FileSelectionDialog fileSelection = new FileSelectionDialog(
null, true, "BamView", "BAM");
bam = fileSelection.getFiles(".*\\.(bam|cram)$");
bam = fileSelection.getFiles(BAM_SUFFIX);
reference = fileSelection.getReferenceFile();
if(reference == null || reference.equals(""))
reference = null;
......
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