tidy

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3589 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/j2ssh/SshLogin.java

@@ -58,7 +58,6 @@ public class SshLogin
 {
   // defaults
   private String logfile  = null;
-  private String wdir     = "/nfs/pathscratch1/scratch";
 
   // login variables
   private String hostname = null;

uk/ac/sanger/artemis/j2ssh/SshPSUClient.java

@@ -212,6 +212,9 @@ public class SshPSUClient extends Thread
         db = "%uniprot";
     } 
 
+    if(settings.getProperty("wdir") != null)
+      wdir = settings.getProperty("wdir");
+
     if(cmd != null)
     {
       if(cmd.equals("blastp") && settings.getProperty("blastp") != null)