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Commit c38b3d2b authored by tcarver's avatar tcarver
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provide auto fix for GFF

parent 74365ef2
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...@@ -63,25 +63,28 @@ class ValidateViewer extends FileViewer implements EntryGroupChangeListener ...@@ -63,25 +63,28 @@ class ValidateViewer extends FileViewer implements EntryGroupChangeListener
update(features); update(features);
setVisible(true); setVisible(true);
final JButton fixButton = new JButton("Auto-Fix"); if( entryGrp == null || GeneUtils.isGFFEntry( entryGrp ) )
fixButton.addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent e) final JButton fixButton = new JButton("Auto-Fix Boundaries");
fixButton.addActionListener(new ActionListener()
{ {
try public void actionPerformed(ActionEvent e)
{ {
entryGrp.getActionController().startAction(); try
for(int i=0; i<features.size(); i++) {
fixBoundary(features.elementAt(i)); entryGrp.getActionController().startAction();
for(int i=0; i<features.size(); i++)
fixBoundary(features.elementAt(i));
}
finally
{
entryGrp.getActionController().endAction();
update(features);
}
} }
finally });
{ button_panel.add(fixButton);
entryGrp.getActionController().endAction(); }
update(features);
}
}
});
button_panel.add(fixButton);
button_panel.add(showFailedFeatures); button_panel.add(showFailedFeatures);
showFailedFeatures.addItemListener(new ItemListener(){ showFailedFeatures.addItemListener(new ItemListener(){
......
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