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Commit d04cc6fb authored by tjc's avatar tjc
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allow negative data values

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13517 ee4ac58c-ac51-4696-9907-e4b3aa274f04
parent f7699f80
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......@@ -120,13 +120,13 @@ public class UserDataAlgorithm extends BaseAlgorithm
LinePushBackReader pushback_reader = new LinePushBackReader (document_reader);
String first_line = pushback_reader.readLine ();
Pattern dataPattern = Pattern.compile("^\\s*([\\d\\.]+\\s*)+$");
Pattern dataPattern = Pattern.compile("^\\s*([\\d\\.-]+\\s*)+$");
Pattern blastPattern = Pattern.compile(
"^(\\S+\\t+){2}[\\d\\.]+\\t+(\\d+\\t+){7}\\S+\\t+(\\s*\\d+)$");
Pattern mspCrunchPattern = Pattern.compile(
"^\\d+\\s[\\d\\.]+(\\s\\d+){2}\\s\\D\\S+(\\s\\d+){2}\\s\\D\\S+.*");
if(dataPattern.matcher(first_line).matches())
FORMAT = BASE_PER_LINE_FORMAT;
else if(blastPattern.matcher(first_line).matches())
......
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