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Commit eefe3086 authored by tcarver's avatar tcarver
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update

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Version XX
Add validation checks. This will check the following:
All file types:
- CDS have no internal stop codon
- CDS have valid stop codon
GFF / Chado:
- check complete gene model
- check boundaries are valid
- check all features are on the same strand
- check CDS features have a phase
- check attribute column
- qualifiers have a value (not empty)
- only reserved tags start with uppercase
Validation can be run in two ways:
1. using the option in View->Feature Filters->Validation checks... which shows
'failed' features in feature list windows
2. selecting 'Validation report ...' option in the popup menu when right clicking
on the feature display. This produces a report with an option to auto-fix gene
boundaries and stop codons.
Version 15
Multiple BAM panels can be opened using the bamClone flag this is used with
the -Dbam flag:
art -Dbam='/pathToFile/file1.bam,/pathToFile/file2.bam' -DbamClone=n
......
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