Skip to content
Snippets Groups Projects
Commit f900eaf3 authored by tcarver's avatar tcarver
Browse files

update to validation report section

parent eb7a5cf2
No related branches found
No related tags found
No related merge requests found
...@@ -150,10 +150,10 @@ check that the gene name prefix is consistent within a gene model ...@@ -150,10 +150,10 @@ check that the gene name prefix is consistent within a gene model
<TITLE>Validation Report</TITLE> <TITLE>Validation Report</TITLE>
<PARA> <PARA>
The validation report window displays a summary for the failed features. The The validation report window displays a summary for the features that have failed one or
title bar of the window displays the number of features that have passed and more of the annotation checks above. The title bar of the window displays the number of
the number that have failed the validation checks. The problems identified features that have passed and the number that have failed the validation checks. The
are highlighted in red. problems identified are highlighted in red.
</PARA> </PARA>
<PARA> <PARA>
...@@ -165,7 +165,7 @@ are highlighted in red. ...@@ -165,7 +165,7 @@ are highlighted in red.
<PARA> <PARA>
Some of the errors can be fixed automatically. The 'Auto-Fix' button opens a window Some of the errors can be fixed automatically. The 'Auto-Fix' button opens a window
with the fixes enabled that are available for the entry type that is loaded in &prog;. It will with the fixes enabled that are available for the entry type that is loaded in &prog;. For example, it will
attempt to fix CDS features that have been found not to end in stop codons. If the last codon is not a attempt to fix CDS features that have been found not to end in stop codons. If the last codon is not a
stop codon, but the very next codon is a stop codon, then the end of the feature is stop codon, but the very next codon is a stop codon, then the end of the feature is
extended by three bases. extended by three bases.
...@@ -173,7 +173,7 @@ extended by three bases. ...@@ -173,7 +173,7 @@ extended by three bases.
<PARA> <PARA>
For GFF3 and chado entries &prog; will also attempt to fix problems it finds with gene For GFF3 and chado entries &prog; will also attempt to fix problems it finds with gene
boundaries and if a phase is absent then a default phase of 0 is given. Once these are boundaries and if a phase is absent then a default phase of 0 is given. Once these are
fixed the results window will automatically update and remove problems it has fixed the results window will automatically update and remove the problems it has
managed to resolved. managed to resolved.
</PARA> </PARA>
</SECT2> </SECT2>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment