Commits · 47069fefa03363165f724f35b06ead329f85f62b · violethaze74 / Artemis

Apr 26, 2010

add plasmid to list of srcfeatures · 47069fef

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13746 ee4ac58c-ac51-4696-9907-e4b3aa274f04

47069fef

Apr 23, 2010

fix for numeric Parent name · fa85978d

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13742 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fa85978d

fix for search results in zipped file · 056ba8a2

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13741 ee4ac58c-ac51-4696-9907-e4b3aa274f04

056ba8a2

write temp file · a0d813b8

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13740 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a0d813b8

zip results · 010987ad

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13735 ee4ac58c-ac51-4696-9907-e4b3aa274f04

010987ad

Apr 22, 2010

change containsEntry to be more flexible · 25065b11

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13731 ee4ac58c-ac51-4696-9907-e4b3aa274f04

25065b11

handle reading from zipped files · 1b00461a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13729 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1b00461a

zip file documents · 25cd550e

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13728 ee4ac58c-ac51-4696-9907-e4b3aa274f04

25cd550e

write out centromere features as a misc_feature · 257c1049

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13727 ee4ac58c-ac51-4696-9907-e4b3aa274f04

257c1049

add to centromere qualifiers · 4b7447d1

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13726 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4b7447d1

Apr 20, 2010

update · 1bdf2cf7

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13707 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1bdf2cf7

speed up loading gene names for ortholog features · 65b551d6

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13706 ee4ac58c-ac51-4696-9907-e4b3aa274f04

65b551d6

fix for writedb_entry · 1f543177

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13705 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1f543177

Apr 19, 2010

add picard jars to classpath · 53059d9b

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13704 ee4ac58c-ac51-4696-9907-e4b3aa274f04

53059d9b

changes to printing when a BamView panel is included in ACT · 1411a076

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13701 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1411a076

Apr 16, 2010

update · 06112911

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13700 ee4ac58c-ac51-4696-9907-e4b3aa274f04

06112911

update · 2a83d3da

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13699 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2a83d3da

add BamView panel · 417f2639

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13698 ee4ac58c-ac51-4696-9907-e4b3aa274f04

417f2639

Apr 15, 2010

catch exceptions from BamView · ba0b4d5a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13692 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ba0b4d5a

filter out match_part features when reading from the database · cbc90852

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13690 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cbc90852

check is_analysis and cvterm · f0db06c5

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13689 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f0db06c5

check for is_analysis flag · d26ceca7

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13688 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d26ceca7

Apr 13, 2010

update · be5acc51

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13670 ee4ac58c-ac51-4696-9907-e4b3aa274f04

be5acc51

Apr 09, 2010

use ReferencePanel form · be07d0d3

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13650 ee4ac58c-ac51-4696-9907-e4b3aa274f04

be07d0d3

use ReferencePanel form · c625d77e

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13649 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c625d77e

set size in the constructor · 3c6423f3

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13648 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3c6423f3

Mar 29, 2010

new logo · 7961bee1

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13593 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7961bee1

Mar 25, 2010

remove html after 1 min · ae6174a2

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13569 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ae6174a2

Mar 23, 2010

do not set segment Name when inserting segments · dbb9cadd

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13547 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dbb9cadd

Mar 22, 2010

add useSRS VM option to force object editor to use SRS · bc77e390

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13538 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bc77e390

change for history qualifier · 37b57757

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13537 ee4ac58c-ac51-4696-9907-e4b3aa274f04

37b57757

Mar 19, 2010

update · b2007475

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13536 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b2007475

fix for history qualifier · 8b4a94b1

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13535 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8b4a94b1

fixes · f5b720fb

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13534 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f5b720fb

handle UTRs · aad42885

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13533 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aad42885

Mar 17, 2010

allow negative data values · d04cc6fb

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13517 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d04cc6fb

Mar 16, 2010

update · f7699f80

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13491 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f7699f80

changes to handle semi-colon separators in the qualifier field of a history term · 818cb811

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13484 ee4ac58c-ac51-4696-9907-e4b3aa274f04

818cb811

Mar 15, 2010

correct user graph · 6b92982e

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13481 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6b92982e

Mar 10, 2010

make stack view the default · 79342b21

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13453 ee4ac58c-ac51-4696-9907-e4b3aa274f04

79342b21

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