Commits · 5397b495b2588518b28e136772bee00181214102 · violethaze74 / Artemis

Mar 26, 2008

1.6 · 5397b495

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7234 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5397b495

Mar 25, 2008

call setCounts() at end of readSequence() · 90247bda

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7233 ee4ac58c-ac51-4696-9907-e4b3aa274f04

90247bda

add artemis_sqlmap · 7561273f

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7232 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7561273f

Mar 19, 2008

fix for intergenic feature creation · acfb6a70

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7231 ee4ac58c-ac51-4696-9907-e4b3aa274f04

acfb6a70

Mar 13, 2008

update · 6911b1a8

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7230 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6911b1a8

fixes for creating intergenic region · e6d8d32e

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7229 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e6d8d32e

update · 3e59baab

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7228 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3e59baab

speed up · e8872785

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7227 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e8872785

create new entry for intergenic regions · 1a2c452a

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7226 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1a2c452a

Mar 12, 2008

fix for overlapping CDS in to create intergenic features · a8e485ec

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7225 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a8e485ec

Mar 07, 2008

increase Pool.MaximumWait time · 563aa30d

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7214 ee4ac58c-ac51-4696-9907-e4b3aa274f04

563aa30d

speed up getFeature and getResidueFeatures · 5fc4643c

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7213 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5fc4643c

speed up getFeatureDbXRefsBySrcFeature · e1395d07

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7212 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e1395d07

update · eb51d6e7

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7211 ee4ac58c-ac51-4696-9907-e4b3aa274f04

eb51d6e7

add insertAnalysis · 48c9009d

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7210 ee4ac58c-ac51-4696-9907-e4b3aa274f04

48c9009d

latest · f006a834

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7209 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f006a834

add in analysis row for each similarity qualifier added · bcf480b4

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7208 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bcf480b4

contig ordering options · bdf51e82

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7207 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bdf51e82

Mar 06, 2008

fix for user plot · c015b474

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7203 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c015b474

create features based on graph peaks · ca7e8863

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7202 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ca7e8863

calculateFeatures · 9aad5d54

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7201 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9aad5d54

create features based on plot peaks · 7b61ceea

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7200 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7b61ceea

Mar 05, 2008

fix for fasta34 · b92ee647

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7199 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b92ee647

Feb 27, 2008

fix · 57726022

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7170 ee4ac58c-ac51-4696-9907-e4b3aa274f04

57726022

add intergenic creation · 14cbda66

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7169 ee4ac58c-ac51-4696-9907-e4b3aa274f04

14cbda66

Feb 26, 2008

new version · 03cdb651

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7168 ee4ac58c-ac51-4696-9907-e4b3aa274f04

03cdb651

Feb 25, 2008

add hyperlinks · 05a1ecc4

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7167 ee4ac58c-ac51-4696-9907-e4b3aa274f04

05a1ecc4

use SYNONYM_TAG_CVNAME · c3b044e1

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7166 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c3b044e1

fix for go evidence code being blank · 7aa81ee0

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7165 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7aa81ee0

tidy getEndOfLink · 76df0f0a

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7164 ee4ac58c-ac51-4696-9907-e4b3aa274f04

76df0f0a

Feb 22, 2008

configure database hyperlinks in options file · a162e8e1

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7163 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a162e8e1

Feb 21, 2008

remove getPolypeptideNames() · 5f680944

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7162 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5f680944

show products · 82339be9

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7161 ee4ac58c-ac51-4696-9907-e4b3aa274f04

82339be9

show ortholog products · 005661ca

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7160 ee4ac58c-ac51-4696-9907-e4b3aa274f04

005661ca

updates for lazy loading FeatureCvTerms · a7f7f6e9

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7159 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a7f7f6e9

new cluster changes · 28779619

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7158 ee4ac58c-ac51-4696-9907-e4b3aa274f04

28779619

update · ca14f096

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7157 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ca14f096

Feb 19, 2008

get primary dbxref in getFeature · 280383c3

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7156 ee4ac58c-ac51-4696-9907-e4b3aa274f04

280383c3

add redo · 80d843a9

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7155 ee4ac58c-ac51-4696-9907-e4b3aa274f04

80d843a9

add write · 54fd45ab

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7154 ee4ac58c-ac51-4696-9907-e4b3aa274f04

54fd45ab

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