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Created with Raphaël 2.2.08Oct4324Sep11Jun729May3Apr29Mar28272623212096213Feb12965231Jan292625823Oct9225Sep27Jan23Nov2212Sep20Apr28Jan9Nov727Oct26242226Aug1411Jun1022May2113627Jan234Nov323Oct4Sep19Aug1815149Jul25Jun15May986110Apr9874331Mar2827252421191413121119Feb18171312654331Jan302924222017141310613Dec105427Nov262120151275430Oct24231615141187123Sep2019181716131210964330Aug272221201916151413129631Jul3025241812111083227Jun26252421191817121130May287330Apr292624221918121095427Mar21201914127428FebFixed read properties file plugin optionAdded some comments to test scriptsRemoved docs and added it to gh-pages branchMerge pull request #266 from kpepper/gh-pagesAdded the Chado folder, just as a place to store it. This folder was originally in the Artemis docs folder.Fixed sytntax errorTravis changesAdded debug flagAdded a mvn initialize call to before install sectiontry to force travis to install the local jarsUse mvn install targetSimplified to get it working againAdded missing local ibatis jarTemporarily disabled tests for travisChanged mvn commandDescription text changeAdded evosuite folder to gitignore for the momentProject restructuring changesUpdated picard jar to 2.18.14, which includes fixes for htsdjk github issues 1065 and 1127Removed redundant old j2ssh-artemis-plugin.jarRemoved redundant commons logging jarRecreated Evosuite tests. Updated README from master branch. Various pom changes including removing the ssh plugin jar. Removed latex files from docs directory as these are no superceded by docx manuals that can be exported to html/pdfMerge pull request #265 from kpepper/gh-pagesChanged user guide urls to point at sanger-pathogens main repoAdded user guide pdf links to pagesAdded pdf manualsAdded ACT manual pagesFix artemis manual file nameFix artemis manual directory pathFirst test of adding Artemis manual HTML pagesMerge pull request #262 from sanger-pathogens/github_issue_261_fixeb-apollo-gener…eb-apollo-generate_namesFixed GitHub issue 261 - escaped line feed left in manifest when building on linux. Also changed name of dnaplotter jar to be consistent and because linux is case sensitive so it should exactly match the name in the scriptAdding a few evosuite testsMerge pull request #260 from sanger-pathogens/bam_caching_bug_fixFix for RT issue 624271Added more FAQ sections to all READMEs as part of Artemis web pages tidy-up. Added poster reference on Artemis README.Merge pull request #259 from sanger-pathogens/gh-pages-updatesVarious updates to github pages, inc removal of sourceforge references.Merge pull request #258 from ssjunnebo/589110_readmebadges on separate rows